EpiCompare Report

EpiCompare compares different epigenetic datasets for benchmarking and quality control purposes.

Dataset summary

Summary of peak files

## [1] "File1: ENCODE"
## [1] "File2: CnT"

Peakfile information

Summary

## Loading required package: GenomicRanges

## Loading required package: stats4

## Loading required package: BiocGenerics

## 
## Attaching package: 'BiocGenerics'

## The following objects are masked from 'package:stats':
## 
##     IQR, mad, sd, var, xtabs

## The following objects are masked from 'package:base':
## 
##     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
##     as.data.frame, basename, cbind, colnames, dirname, do.call,
##     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
##     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
##     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
##     tapply, union, unique, unsplit, which.max, which.min

## Loading required package: S4Vectors

## 
## Attaching package: 'S4Vectors'

## The following objects are masked from 'package:base':
## 
##     I, expand.grid, unname

## Loading required package: IRanges

## Loading required package: GenomeInfoDb

file_names	totalN	blacklist_percent
ENCODE	1	1.28
CnT	1670	5.39

Peak widths

Peak width after removing blacklisted peaks.

Overlapping Peaks

Sample files

Sample files + other ENCODE datasets