EpiCompare compares different epigenetic datasets for benchmarking and quality control purposes.
Summary of peak files
## [1] "File1: ENCODE"
## [1] "File2: CnT"
## Loading required package: GenomicRanges
## Loading required package: stats4
## Loading required package: BiocGenerics
##
## Attaching package: 'BiocGenerics'
## The following objects are masked from 'package:stats':
##
## IQR, mad, sd, var, xtabs
## The following objects are masked from 'package:base':
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## Filter, Find, Map, Position, Reduce, anyDuplicated, append,
## as.data.frame, basename, cbind, colnames, dirname, do.call,
## duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
## lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
## pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
## tapply, union, unique, unsplit, which.max, which.min
## Loading required package: S4Vectors
##
## Attaching package: 'S4Vectors'
## The following objects are masked from 'package:base':
##
## I, expand.grid, unname
## Loading required package: IRanges
## Loading required package: GenomeInfoDb
| file_names | totalN | blacklist_percent |
|---|---|---|
| ENCODE | 1 | 1.28 |
| CnT | 1670 | 5.39 |
Peak width after removing blacklisted peaks.